SMTL ID : 8pvw.1

Structure of a short E. coli adenylate kinase in complex with Ap5A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.1: 29 residues within 4Å: Chain A: P.9, G.10, A.11, G.12, K.13, G.14, T.15, T.31, G.32, L.35, R.36, M.53, K.57, L.58, V.59, V.64, G.85, F.86, R.88, Q.92, R.119, R.123, R.129, R.140, G.171, K.173, P.174, V.175, V.178 43 PLIP interactions: 43 interactions with chain A Hydrogen bonds: A:G.10, A:A.11, A:G.12, A:K.13, A:G.14, A:T.15, A:T.15, A:T.31, A:K.57, A:V.59, A:R.88, A:Q.92, A:Q.92, A:R.119, A:R.140, A:K.173 Water bridges: A:K.13, A:K.13, A:K.13, A:K.13, A:G.32, A:R.36, A:R.119, A:R.119, A:R.119, A:R.123, A:R.123, A:R.129 Salt bridges: A:K.13, A:K.13, A:K.13, A:R.36, A:R.88, A:R.88, A:R.123, A:R.123, A:R.129, A:R.129, A:R.129, A:R.140, A:R.140 pi-Cation interactions: A:R.88, A:R.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rodriguez, J.A. et al., Structure of a short E. coli adenylate kinase in complex with Ap5A. To Be Published

Release Date

2025-02-05

Peptides

Adenylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenylate kinase