SMTL ID : 8pvy.1

Cryo-EM structure of the human BRISC dimer complex bound to compound FX-171-C

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-4-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: V.90, W.120, D.135 No protein-ligand interaction detected (PLIP) ZN.2: 3 residues within 4Å: Chain C: H.122, H.124, D.135 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.122, C:H.124, C:D.135 ZN.4: 3 residues within 4Å: Chain G: V.90, W.120, D.135 No protein-ligand interaction detected (PLIP) ZN.5: 3 residues within 4Å: Chain I: V.90, E.91, W.120 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:V.90

2 x G1V: N-[(1R,5S)-3-azabicyclo[3.1.0]hexan-6-yl]-1-[2,6-bis(chloranyl)phenyl]carbonyl-4-[[2,6-bis(chloranyl)phenyl]carbonylamino]pyrazole-3-carboxamide(Non-covalent)

G1V.3: 17 residues within 4Å: Chain C: I.127, T.128, V.129, W.130, S.155, I.158, D.160, R.167, L.169 Chain D: I.133, S.134, T.135, T.140, A.142 Chain K: F.142, C.247, D.250 7 PLIP interactions: 1 interactions with chain K, 4 interactions with chain C, 2 interactions with chain D Salt bridges: K:D.250, C:D.160 Hydrophobic interactions: C:T.128, D:I.133, D:T.135 Hydrogen bonds: C:V.129 Halogen bonds: C:S.155 G1V.6: 14 residues within 4Å: Chain F: F.142, C.247 Chain H: I.133, S.134, T.135, T.140, A.142 Chain I: I.127, T.128, V.129, W.130, S.155, R.167, L.169 6 PLIP interactions: 1 interactions with chain F, 3 interactions with chain I, 2 interactions with chain H Salt bridges: F:D.250, I:D.160 Hydrophobic interactions: I:T.128, H:I.133, H:T.135 Hydrogen bonds: I:V.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chandler, F. et al., First-in-class DUB Molecular Glues and Inhibitors of Inflammation. To be published

Release Date

2025-02-12

Peptides

Lys-63-specific deubiquitinase BRCC36: ACGI
BRISC complex subunit Abraxas 2: BDHJ
BRISC and BRCA1-A complex member 2: EFKL
BRISC and BRCA1-A complex member 1: MNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

G
G

I
I

B
B

D
D

H
H

J
J

E
E

F
F

K
K

L
L

M
M

N
N

O
O

P
P

Lys-63-specific deubiquitinase BRCC36

BRISC complex subunit Abraxas 2

BRISC and BRCA1-A complex member 2

BRISC and BRCA1-A complex member 1

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