SMTL ID : 8px2.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 1,3-dimethyl-5-(1-((tetrahydro-2H-pyran-4-yl)methyl)-1H-benzo[d]imidazol-2-yl)pyridin-2(1H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x NUB: 1,3-dimethyl-5-[1-(oxan-4-ylmethyl)benzimidazol-2-yl]pyridin-2-one(Non-covalent)

NUB.1: 10 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.41, L.43, Y.88, N.89, H.93, V.95 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.30, A:L.41, A:L.41, A:L.43, A:Y.88, A:V.95 Hydrogen bonds: A:N.89 pi-Stacking: A:W.30

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 4 residues within 4Å: Chain A: L.6, N.14, E.64, R.66 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.14 Water bridges: A:K.11, A:K.11, A:R.66 Salt bridges: A:R.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradley, E. et al., Structure-Guided Design of a Domain-Selective Bromodomain and Extra Terminal N-Terminal Bromodomain Chemical Probe. J.Med.Chem. (2023)

Release Date

2023-10-18

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

Related Entries With Identical Sequence