SMTL ID : 8px8.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH (S)-5-(1-((1-acetylpiperidin-3-yl)methyl)-5-bromo-1H-benzo[d]imidazol-2-yl)-1,3-dimethylpyridin-2(1H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.104

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 5 residues within 4Å: Chain A: K.87, Y.88, N.89, P.90, P.91 No protein-ligand interaction detected (PLIP)

1 x I0U: 5-[5-bromanyl-1-[[(3~{S})-1-ethanoylpiperidin-3-yl]methyl]benzimidazol-2-yl]-1,3-dimethyl-pyridin-2-one(Non-covalent)

I0U.3: 11 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.41, L.43, Y.88, N.89, H.93, D.94, V.95 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.30, A:P.31, A:L.41, A:L.41, A:L.43, A:Y.88, A:V.95, A:V.95 Hydrogen bonds: A:N.89, A:D.94, A:V.95 pi-Stacking: A:W.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradley, E. et al., Structure-Guided Design of a Domain-Selective Bromodomain and Extra Terminal N-Terminal Bromodomain Chemical Probe. J.Med.Chem. (2023)

Release Date

2023-10-18

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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