SMTL ID : 8py2.1

Cryo-EM structure of the human BRISC dimer complex bound to compound JMS-175-2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-4-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: V.90, H.122, H.124, D.135 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.122, A:H.124, A:D.135 ZN.2: 4 residues within 4Å: Chain C: E.33, H.122, H.124, D.135 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.122, C:H.124, C:H.124, C:D.135 ZN.5: 5 residues within 4Å: Chain G: E.33, D.88, H.122, H.124, D.135 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:H.122, G:H.124, G:D.135 ZN.6: 4 residues within 4Å: Chain I: D.88, H.122, H.124, D.135 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:H.122, I:H.124, I:D.135

2 x X8C: 1-[2,6-bis(chloranyl)phenyl]carbonyl-4-[[2,6-bis(chloranyl)phenyl]carbonylamino]-N-piperidin-4-yl-pyrazole-3-carboxamide(Non-covalent)

X8C.3: 18 residues within 4Å: Chain C: I.127, T.128, V.129, W.130, S.155, I.158, R.167, L.169 Chain D: I.133, S.134, T.135, T.140, H.141, A.142 Chain K: R.139, F.142, C.247, D.250 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain C Hydrophobic interactions: D:I.133, D:T.135, C:I.158 Hydrogen bonds: C:V.129 Halogen bonds: C:S.155 X8C.4: 19 residues within 4Å: Chain F: R.139, F.142, G.245, C.247, I.249, D.250 Chain H: I.133, S.134, T.135, T.140, H.141, A.142 Chain I: I.127, T.128, V.129, W.130, I.158, R.167, L.169 4 PLIP interactions: 2 interactions with chain H, 1 interactions with chain I, 1 interactions with chain F Hydrophobic interactions: H:I.133, I:I.158 Halogen bonds: H:H.141, F:C.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chandler, F. et al., First-in-class DUB Molecular Glues and Inhibitors of Inflammation. To be published

Release Date

2025-02-05

Peptides

Lys-63-specific deubiquitinase BRCC36: ACGI
BRISC complex subunit Abraxas 2: BDHJ
BRISC and BRCA1-A complex member 2: EFKL
BRISC and BRCA1-A complex member 1: MNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

G
G

I
I

B
B

D
D

H
H

J
J

E
E

F
F

K
K

L
L

M
M

N
N

O
O

P
P

Lys-63-specific deubiquitinase BRCC36

BRISC complex subunit Abraxas 2

BRISC and BRCA1-A complex member 2

BRISC and BRCA1-A complex member 1

Related Entries With Identical Sequence