- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 6 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.5: 9 residues within 4Å:- Chain A: K.288, D.370, A.371, E.372, G.373, R.374, L.398
- Ligands: NA.6, NA.10
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.374, A:R.374, A:L.398
BCT.20: 9 residues within 4Å:- Chain B: K.288, D.370, A.371, E.372, G.373, R.374, L.398
- Ligands: NA.21, NA.25
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.374, B:R.374, B:L.398
BCT.35: 9 residues within 4Å:- Chain C: K.288, D.370, A.371, E.372, G.373, R.374, L.398
- Ligands: NA.36, NA.40
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.374, C:R.374, C:L.398
BCT.50: 9 residues within 4Å:- Chain D: K.288, D.370, A.371, E.372, G.373, R.374, L.398
- Ligands: NA.51, NA.55
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.374, D:R.374, D:L.398
BCT.65: 9 residues within 4Å:- Chain E: K.288, D.370, A.371, E.372, G.373, R.374, L.398
- Ligands: NA.66, NA.70
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:R.374, E:R.374, E:L.398
BCT.80: 9 residues within 4Å:- Chain F: K.288, D.370, A.371, E.372, G.373, R.374, L.398
- Ligands: NA.81, NA.85
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:R.374, F:R.374, F:L.398
- 30 x NA: SODIUM ION(Non-functional Binders)
NA.6: 6 residues within 4Å:- Chain A: K.288, D.293, D.311, E.372
- Ligands: BCT.5, NA.10
Ligand excluded by PLIPNA.7: 5 residues within 4Å:- Chain A: A.100, G.101, K.102, E.103, L.106
Ligand excluded by PLIPNA.8: 3 residues within 4Å:- Chain A: G.107, R.109, Q.110
Ligand excluded by PLIPNA.9: 4 residues within 4Å:- Chain A: Q.447, G.460, P.461, K.462
Ligand excluded by PLIPNA.10: 6 residues within 4Å:- Chain A: D.293, K.300, D.370, E.372
- Ligands: BCT.5, NA.6
Ligand excluded by PLIPNA.21: 6 residues within 4Å:- Chain B: K.288, D.293, D.311, E.372
- Ligands: BCT.20, NA.25
Ligand excluded by PLIPNA.22: 5 residues within 4Å:- Chain B: A.100, G.101, K.102, E.103, L.106
Ligand excluded by PLIPNA.23: 3 residues within 4Å:- Chain B: G.107, R.109, Q.110
Ligand excluded by PLIPNA.24: 4 residues within 4Å:- Chain B: Q.447, G.460, P.461, K.462
Ligand excluded by PLIPNA.25: 6 residues within 4Å:- Chain B: D.293, K.300, D.370, E.372
- Ligands: BCT.20, NA.21
Ligand excluded by PLIPNA.36: 6 residues within 4Å:- Chain C: K.288, D.293, D.311, E.372
- Ligands: BCT.35, NA.40
Ligand excluded by PLIPNA.37: 5 residues within 4Å:- Chain C: A.100, G.101, K.102, E.103, L.106
Ligand excluded by PLIPNA.38: 3 residues within 4Å:- Chain C: G.107, R.109, Q.110
Ligand excluded by PLIPNA.39: 4 residues within 4Å:- Chain C: Q.447, G.460, P.461, K.462
Ligand excluded by PLIPNA.40: 6 residues within 4Å:- Chain C: D.293, K.300, D.370, E.372
- Ligands: BCT.35, NA.36
Ligand excluded by PLIPNA.51: 6 residues within 4Å:- Chain D: K.288, D.293, D.311, E.372
- Ligands: BCT.50, NA.55
Ligand excluded by PLIPNA.52: 5 residues within 4Å:- Chain D: A.100, G.101, K.102, E.103, L.106
Ligand excluded by PLIPNA.53: 3 residues within 4Å:- Chain D: G.107, R.109, Q.110
Ligand excluded by PLIPNA.54: 4 residues within 4Å:- Chain D: Q.447, G.460, P.461, K.462
Ligand excluded by PLIPNA.55: 6 residues within 4Å:- Chain D: D.293, K.300, D.370, E.372
- Ligands: BCT.50, NA.51
Ligand excluded by PLIPNA.66: 6 residues within 4Å:- Chain E: K.288, D.293, D.311, E.372
- Ligands: BCT.65, NA.70
Ligand excluded by PLIPNA.67: 5 residues within 4Å:- Chain E: A.100, G.101, K.102, E.103, L.106
Ligand excluded by PLIPNA.68: 3 residues within 4Å:- Chain E: G.107, R.109, Q.110
Ligand excluded by PLIPNA.69: 4 residues within 4Å:- Chain E: Q.447, G.460, P.461, K.462
Ligand excluded by PLIPNA.70: 6 residues within 4Å:- Chain E: D.293, K.300, D.370, E.372
- Ligands: BCT.65, NA.66
Ligand excluded by PLIPNA.81: 6 residues within 4Å:- Chain F: K.288, D.293, D.311, E.372
- Ligands: BCT.80, NA.85
Ligand excluded by PLIPNA.82: 5 residues within 4Å:- Chain F: A.100, G.101, K.102, E.103, L.106
Ligand excluded by PLIPNA.83: 3 residues within 4Å:- Chain F: G.107, R.109, Q.110
Ligand excluded by PLIPNA.84: 4 residues within 4Å:- Chain F: Q.447, G.460, P.461, K.462
Ligand excluded by PLIPNA.85: 6 residues within 4Å:- Chain F: D.293, K.300, D.370, E.372
- Ligands: BCT.80, NA.81
Ligand excluded by PLIP- 30 x CL: CHLORIDE ION(Non-functional Binders)
CL.11: 4 residues within 4Å:- Chain A: K.426, A.427, Q.510, E.514
Ligand excluded by PLIPCL.12: 5 residues within 4Å:- Chain A: T.221, G.224, E.225, V.241, R.267
Ligand excluded by PLIPCL.13: 2 residues within 4Å:- Chain A: P.265, R.267
Ligand excluded by PLIPCL.14: 5 residues within 4Å:- Chain A: G.407, S.408, N.409
- Chain F: Y.444, Q.447
Ligand excluded by PLIPCL.15: 2 residues within 4Å:- Chain A: A.185, D.186
Ligand excluded by PLIPCL.26: 4 residues within 4Å:- Chain B: K.426, A.427, Q.510, E.514
Ligand excluded by PLIPCL.27: 5 residues within 4Å:- Chain B: T.221, G.224, E.225, V.241, R.267
Ligand excluded by PLIPCL.28: 2 residues within 4Å:- Chain B: P.265, R.267
Ligand excluded by PLIPCL.29: 5 residues within 4Å:- Chain B: G.407, S.408, N.409
- Chain E: Y.444, Q.447
Ligand excluded by PLIPCL.30: 2 residues within 4Å:- Chain B: A.185, D.186
Ligand excluded by PLIPCL.41: 4 residues within 4Å:- Chain C: K.426, A.427, Q.510, E.514
Ligand excluded by PLIPCL.42: 5 residues within 4Å:- Chain C: T.221, G.224, E.225, V.241, R.267
Ligand excluded by PLIPCL.43: 2 residues within 4Å:- Chain C: P.265, R.267
Ligand excluded by PLIPCL.44: 5 residues within 4Å:- Chain C: G.407, S.408, N.409
- Chain D: Y.444, Q.447
Ligand excluded by PLIPCL.45: 2 residues within 4Å:- Chain C: A.185, D.186
Ligand excluded by PLIPCL.56: 4 residues within 4Å:- Chain D: K.426, A.427, Q.510, E.514
Ligand excluded by PLIPCL.57: 5 residues within 4Å:- Chain D: T.221, G.224, E.225, V.241, R.267
Ligand excluded by PLIPCL.58: 2 residues within 4Å:- Chain D: P.265, R.267
Ligand excluded by PLIPCL.59: 5 residues within 4Å:- Chain C: Y.444, Q.447
- Chain D: G.407, S.408, N.409
Ligand excluded by PLIPCL.60: 2 residues within 4Å:- Chain D: A.185, D.186
Ligand excluded by PLIPCL.71: 4 residues within 4Å:- Chain E: K.426, A.427, Q.510, E.514
Ligand excluded by PLIPCL.72: 5 residues within 4Å:- Chain E: T.221, G.224, E.225, V.241, R.267
Ligand excluded by PLIPCL.73: 2 residues within 4Å:- Chain E: P.265, R.267
Ligand excluded by PLIPCL.74: 5 residues within 4Å:- Chain B: Y.444, Q.447
- Chain E: G.407, S.408, N.409
Ligand excluded by PLIPCL.75: 2 residues within 4Å:- Chain E: A.185, D.186
Ligand excluded by PLIPCL.86: 4 residues within 4Å:- Chain F: K.426, A.427, Q.510, E.514
Ligand excluded by PLIPCL.87: 5 residues within 4Å:- Chain F: T.221, G.224, E.225, V.241, R.267
Ligand excluded by PLIPCL.88: 2 residues within 4Å:- Chain F: P.265, R.267
Ligand excluded by PLIPCL.89: 5 residues within 4Å:- Chain A: Y.444, Q.447
- Chain F: G.407, S.408, N.409
Ligand excluded by PLIPCL.90: 2 residues within 4Å:- Chain F: A.185, D.186
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Simpson, M.C. et al., Unveiling the Catalytic Mechanism of a Processive Metalloaminopeptidase. Biochemistry (2023)
- Release Date
- 2023-11-15
- Peptides
- Probable cytosol aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 6 x BCT: BICARBONATE ION(Non-functional Binders)
- 30 x NA: SODIUM ION(Non-functional Binders)
- 30 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Simpson, M.C. et al., Unveiling the Catalytic Mechanism of a Processive Metalloaminopeptidase. Biochemistry (2023)
- Release Date
- 2023-11-15
- Peptides
- Probable cytosol aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A