SMTL ID : 8q34.2 (3 other biounits)

Crystal structure of the first bromodomain of human BRD4 in complex with the ligand ZZ001229a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.61, A:T.62, A:N.94 Water bridges: A:T.62, A:T.62

1 x IX4: ~{N}-(1~{H}-imidazo[4,5-b]pyridin-2-ylmethyl)-3-(3-methyl-1,2-diazirin-3-yl)propanamide(Non-covalent)

IX4.2: 13 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.56, C.95, Y.98, N.99, D.104, I.105, M.108 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.42, A:V.46, A:I.105 Hydrogen bonds: A:N.99, A:N.99, A:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abranyi-Balogh, P. et al., Mapping protein binding sites by photoreactive fragment pharmacophores. Commun Chem (2024)

Release Date

2024-02-07

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bromodomain-containing protein 4

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