SMTL ID : 8q3b.1

The closed state of the ASFV apo-RNA polymerase

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.59, C.62, C.69, H.72 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.59, A:C.62, A:C.69, A:H.72 ZN.2: 4 residues within 4Å: Chain A: C.99, C.102, C.134, C.137 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.99, A:C.102, A:C.134, A:C.137 ZN.4: 4 residues within 4Å: Chain B: C.1181, C.1184, C.1199, C.1202 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1181, B:C.1184, B:C.1199, B:C.1202 ZN.5: 4 residues within 4Å: Chain G: C.4, C.7, C.24, C.26 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.4, G:C.7, G:C.24, G:C.26 ZN.6: 4 residues within 4Å: Chain G: C.73, C.76, C.96, C.98 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.73, G:C.76, G:C.96, G:C.98 ZN.7: 4 residues within 4Å: Chain H: C.7, C.10, C.65, C.66 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.7, H:C.10, H:C.65, H:C.66

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.457, D.459, D.461 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.457, A:D.457, A:D.459, A:D.461, A:D.461

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pilotto, S. et al., Structure of the recombinant RNA polymerase from African Swine Fever Virus. Nat Commun (2024)

Release Date

2024-02-14

Peptides

DNA-directed RNA polymerase RPB1 homolog: A
DNA-directed RNA polymerase RPB2 homolog: B
DNA-directed RNA polymerase RPB3-11 homolog: C
DNA-directed RNA polymerase RPB7 homolog: D
DNA-directed RNA polymerase RPB5 homolog: E
DNA-directed RNA polymerase RPB6 homolog: F
Uncharacterized protein C122R: G
DNA-directed RNA polymerase RPB10 homolog: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
I

H
J

DNA-directed RNA polymerase RPB1 homolog

DNA-directed RNA polymerase RPB2 homolog

DNA-directed RNA polymerase RPB3-11 homolog

DNA-directed RNA polymerase RPB7 homolog

DNA-directed RNA polymerase RPB5 homolog

DNA-directed RNA polymerase RPB6 homolog

Uncharacterized protein C122R

DNA-directed RNA polymerase RPB10 homolog

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