SMTL ID : 8q53.1

Crystal structure of truncated human Microtubule-associated proteins 1A/1B light chain 3B (MAP1LC3B) in apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: M.61, H.87, S.88, M.89, V.90, S.91, T.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.90, A:S.91, A:S.91, A:T.94 EDO.2: 1 residues within 4Å: Chain A: G.86 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.85 EDO.3: 3 residues within 4Å: Chain A: H.87, S.88, V.90 No protein-ligand interaction detected (PLIP) EDO.4: 3 residues within 4Å: Chain A: L.54, V.55, P.56 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.50 EDO.5: 5 residues within 4Å: Chain A: K.9, F.14, R.17, D.105, D.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.9, A:R.17, A:D.107 EDO.6: 3 residues within 4Å: Chain A: K.66, R.69 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.69 EDO.7: 5 residues within 4Å: Chain A: S.62, I.65, K.66, V.92 Ligands: EDO.6 No protein-ligand interaction detected (PLIP) EDO.8: 4 residues within 4Å: Chain A: R.38, Y.39, K.40, V.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.40 Water bridges: A:E.37, A:E.37 EDO.9: 6 residues within 4Å: Chain A: F.8, R.12, Q.16, D.20, K.52, F.109 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.12, A:Q.16, A:D.20, A:K.52, A:K.52

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 3 residues within 4Å: Chain A: H.28, P.29, T.30 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., Crystal structure of truncated human Microtubule-associated proteins 1A/1B light chain 3B in apo form. To Be Published

Release Date

2024-08-21

Peptides

Microtubule-associated proteins 1A/1B light chain 3B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Microtubule-associated proteins 1A/1B light chain 3B