SMTL ID : 8q5p.1

Structure of the lysine methyltransferase SETD2 in complex with a peptide derived from human tyrosine kinase ACK1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

hetero-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.83, C.85, C.100, C.104 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:C.85, A:C.100, A:C.104 ZN.2: 5 residues within 4Å: Chain A: C.100, C.113, C.117, C.123 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.100, A:C.113, A:C.117, A:C.123 ZN.3: 4 residues within 4Å: Chain A: C.215, C.262, C.264, C.269 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.215, A:C.262, A:C.264, A:C.269

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.4: 18 residues within 4Å: Chain A: K.144, G.145, W.146, I.186, H.187, Y.188, Y.189, R.209, F.210, M.211, N.212, H.213, Y.250, Q.260, K.261, C.262, F.263, C.264 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:K.144, A:W.146, A:Y.188, A:Y.189, A:H.213, A:H.213, A:Q.260, A:Q.260, A:F.263 Water bridges: A:Q.260 Salt bridges: A:H.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Le Coadou, L. et al., Structural and enzymatic evidence for the methylation of the ACK1 tyrosine kinase by the histone lysine methyltransferase SETD2. Biochem.Biophys.Res.Commun. (2024)

Release Date

2024-04-24

Peptides

Histone-lysine N-methyltransferase SETD2: A
Activated CDC42 kinase 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone-lysine N-methyltransferase SETD2

Activated CDC42 kinase 1

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