SMTL ID : 8q61.1

Co-crystal structure of human AKT2 with compound 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

monomer

Ligands

1 x K06: 6-[4-(1-azanyl-3-methyl-3-oxidanyl-cyclobutyl)phenyl]-7-phenyl-1-propyl-pyrido[2,3-b][1,4]oxazin-2-one(Non-covalent)

K06.1: 19 residues within 4Å: Chain A: W.82, T.84, I.86, E.202, L.206, L.214, T.215, Y.267, L.268, R.271, V.273, V.274, Y.275, R.276, D.277, I.293, T.294, D.295, E.301 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.86, A:L.206, A:L.214, A:L.214, A:Y.267, A:L.268, A:V.273, A:Y.275, A:Y.275, A:D.295 Hydrogen bonds: A:R.271, A:D.277, A:D.277 Water bridges: A:R.276 pi-Stacking: A:W.82

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: K.16, E.19, R.25, R.27, L.54, N.55, D.326 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.19, A:R.25, A:R.27, A:R.27, A:N.55 Water bridges: A:Y.20

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 2 residues within 4Å: Chain A: K.162, K.167 4 PLIP interactions: 4 interactions with chain A Water bridges: A:G.163, A:K.167 Salt bridges: A:K.162, A:K.167 PO4.4: 2 residues within 4Å: Chain A: D.225, R.226 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.187, A:R.226 PO4.5: 3 residues within 4Å: Chain A: R.186, K.187, R.226 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.187 Water bridges: A:E.188 Salt bridges: A:R.186, A:R.226

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 9 residues within 4Å: Chain A: E.19, L.54, N.55, N.56, F.57, R.88, N.327, D.328, Y.329 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.19, A:N.55, A:N.56, A:Y.329 Salt bridges: A:E.19, A:R.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Page, N. et al., Identification and development of a subtype-selective allosteric AKT inhibitor suitable for clinical development. Sci Rep (2022)

Release Date

2023-08-16

Peptides

RAC-beta serine/threonine-protein kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RAC-beta serine/threonine-protein kinase