SMTL ID : 8q6g.1

HUMAN PI4KIIIB IN COMPLEX WITH COVALENTLY BOUND INHIBITOR (COMPOUND 8)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x KIH: 3-(3,4-dimethoxyphenyl)-7-[(4-fluorosulfonyloxyphenyl)methylamino]-2,5-dimethyl-pyrazolo[1,5-a]pyrimidine(Covalent)

KIH.1: 17 residues within 4Å: Chain A: L.85, Y.96, E.143, W.145, K.148, I.170, K.172, E.180, Y.206, I.218, P.220, V.221, V.222, A.224, L.286, I.296 Ligands: EDO.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.170, A:Y.206, A:Y.206, A:I.218, A:V.222, A:I.296, A:I.296 Hydrogen bonds: A:V.221, A:V.221 Water bridges: A:K.172, A:K.172, A:K.172

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: Q.417, T.420, N.421, G.422 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:Q.417, A:T.420, A:G.422

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: W.145, L.166, L.167, S.168, E.219, V.222 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.168, A:S.168, A:E.219 Water bridges: A:L.166 EDO.4: 1 residues within 4Å: Ligands: KIH.1 No protein-ligand interaction detected (PLIP) EDO.5: 3 residues within 4Å: Chain A: R.22, E.23, K.26 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.22, A:R.22, A:K.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cosgrove, B. et al., Covalent targeting of non-cysteine residues in PI4KIII beta. Rsc Chem Biol (2023)

Release Date

2023-12-13

Peptides

Phosphatidylinositol 4-kinase beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphatidylinositol 4-kinase beta

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