SMTL ID : 8q6o.1

X. laevis CMG dimer bound to dimeric DONSON - without ATPase

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

10 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.314, C.317, C.337, C.340 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.314, A:C.317, A:C.337, A:C.340 ZN.2: 4 residues within 4Å: Chain C: C.306, C.309, C.328, C.331 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.306, C:C.309, C:C.328, C:C.331 ZN.3: 4 residues within 4Å: Chain D: C.173, C.176, C.198, C.208 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.173, D:C.176, D:C.198, D:C.208 ZN.4: 4 residues within 4Å: Chain E: C.160, C.163, C.182, C.187 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.160, E:C.163, E:C.182, E:C.187 ZN.5: 5 residues within 4Å: Chain F: C.183, C.186, C.205, S.207, C.210 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.183, F:C.186, F:C.205, F:C.210 ZN.6: 4 residues within 4Å: Chain R: C.314, C.317, C.337, C.340 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:C.314, R:C.317, R:C.337, R:C.340 ZN.7: 4 residues within 4Å: Chain T: C.306, C.309, C.328, C.331 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:C.306, T:C.309, T:C.328, T:C.331 ZN.8: 4 residues within 4Å: Chain U: C.173, C.176, C.198, C.208 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:C.173, U:C.176, U:C.198, U:C.208 ZN.9: 4 residues within 4Å: Chain V: C.160, C.163, C.182, C.187 4 PLIP interactions: 4 interactions with chain V Metal complexes: V:C.160, V:C.163, V:C.182, V:C.187 ZN.10: 5 residues within 4Å: Chain W: C.183, C.186, C.205, S.207, C.210 4 PLIP interactions: 4 interactions with chain W Metal complexes: W:C.183, W:C.186, W:C.205, W:C.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cvetkovic, M.A. et al., The structural mechanism of dimeric DONSON in replicative helicase activation. Mol.Cell (2023)

Release Date

2023-10-18

Peptides

DNA replication licensing factor mcm2: AR
Maternal DNA replication licensing factor mcm3: BS
DNA replication licensing factor mcm4-B: CT
DNA replication licensing factor mcm5-A: DU
Maternal DNA replication licensing factor mcm6: EV
DNA replication licensing factor mcm7-B: FW
DNA replication complex GINS protein PSF1: GM
DNA replication complex GINS protein PSF2: HO
DNA replication complex GINS protein PSF3: IP
Cell division control protein 45 homolog: JQ
DNA replication complex GINS protein SLD5: KN
Protein downstream neighbor of son homolog: LX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

R
2

B
B

S
3

C
C

T
4

D
D

U
5

E
E

V
6

F
F

W
7

G
M

M
G

H
N

O
H

I
O

P
I

J
P

Q
J

K
Q

N
K

L
R

X
L

DNA replication licensing factor mcm2

Maternal DNA replication licensing factor mcm3

DNA replication licensing factor mcm4-B

DNA replication licensing factor mcm5-A

Maternal DNA replication licensing factor mcm6

DNA replication licensing factor mcm7-B

DNA replication complex GINS protein PSF1

DNA replication complex GINS protein PSF2

DNA replication complex GINS protein PSF3

Cell division control protein 45 homolog

DNA replication complex GINS protein SLD5

Protein downstream neighbor of son homolog

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