SMTL ID : 8q6u.1

Crystal structure of a double mutant acetyltransferase from Bacillus cereus species.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

homo-dimer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: I.27, Q.28, W.29, S.30, G.31, G.122, V.123, Y.124, L.158 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.28, A:G.122 Water bridges: A:R.82, A:G.122 EDO.2: 3 residues within 4Å: Chain A: W.19, G.89, N.90 No protein-ligand interaction detected (PLIP) EDO.3: 5 residues within 4Å: Chain A: S.30, G.31, N.32, A.33, Q.73 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.30, A:N.32, A:N.32, A:Q.73 EDO.5: 5 residues within 4Å: Chain B: S.70, G.72, R.82, G.84, K.85 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.70, B:S.70, B:K.85 Water bridges: B:R.82 EDO.6: 8 residues within 4Å: Chain B: I.27, Q.28, W.29, S.30, G.31, G.122, Y.124, L.158 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Q.28, B:G.31, B:G.122 Water bridges: B:R.82, B:R.82, B:R.82, B:K.85, B:K.85, B:G.122 EDO.7: 3 residues within 4Å: Chain B: Q.15, N.18, W.19 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.18, B:W.19

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 2 residues within 4Å: Chain A: H.108, E.113 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.108, A:E.113, H2O.5 ZN.8: 2 residues within 4Å: Chain B: H.108, E.113 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.108, B:E.113, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leonardo Silvestre, H. et al., Functional and structural characterisation of RimL from Bacillus cereus, a new N alpha-acetyltransferase of ribosomal proteins that was wrongly assigned as an aminoglycosyltransferase. Int.J.Biol.Macromol. (2024)

Release Date

2024-03-06

Peptides

Aminoglycoside N6'-acetyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aminoglycoside N6'-acetyltransferase