SMTL ID : 8q7k.2 (1 other biounit)

IRGQ LIR2 peptide in complex with LC3B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x GLU- ASP- GLU- THR- TRP- GLU- VAL- LEU- GLU: Immunity-related GTPase family Q protein

GLU-ASP-GLU-THR-TRP-GLU-VAL-LEU-GLU.1: 20 residues within 4Å: Chain A: D.19, I.23, Q.26, H.27, K.30, P.32, V.33, K.49, K.51, F.52, L.53, V.54, P.55, H.57, L.63, I.66, I.67, R.70, F.108 Ligands: EDO.2 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:I.23, A:I.23, A:I.23, A:P.32, A:K.51, A:F.52, A:F.52, A:L.53, A:V.54, A:L.63, A:F.108 Hydrogen bonds: A:Q.26, A:K.49, A:K.51, A:K.51, A:L.53, A:L.53, A:H.57 Water bridges: A:K.51, A:R.70 Salt bridges: A:H.27, A:K.49, A:K.51, A:R.70

1 x EDO: 1,2-ETHANEDIOL

EDO.2: 6 residues within 4Å: Chain A: F.7, R.10, R.11, T.50, K.51 Ligands: GLU-ASP-GLU-THR-TRP-GLU-VAL-LEU-GLU.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.51 Water bridges: A:K.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herhaus, L. et al., Tumor immune evasion through IRGQ-directed autophagy. To Be Published

Release Date

2024-08-28

Peptides

Microtubule-associated proteins 1A/1B light chain 3B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Microtubule-associated proteins 1A/1B light chain 3B

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