SMTL ID : 8q80.1

Photorhabdus laumondii lectin PLL2 in complex with alpha-methyl-fucoside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

7 x MFU: methyl alpha-L-fucopyranoside(Non-covalent)

MFU.1: 6 residues within 4Å: Chain A: G.173, V.174, G.195, T.196, W.201, W.216 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.201 Hydrogen bonds: A:V.174, A:T.196, A:T.196 MFU.2: 7 residues within 4Å: Chain A: G.125, T.126, I.127, G.147, T.148, W.153, W.168 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.127, A:W.153 Hydrogen bonds: A:T.126, A:T.148, A:T.148 MFU.3: 5 residues within 4Å: Chain A: G.78, K.79, G.100, T.101, W.106 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.106 Hydrogen bonds: A:K.79, A:T.101, A:T.101 MFU.4: 7 residues within 4Å: Chain A: G.317, T.318, I.319, G.339, T.340, W.345, W.357 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.319, A:W.345 Hydrogen bonds: A:T.318, A:T.340, A:T.340 MFU.5: 7 residues within 4Å: Chain B: G.317, T.318, I.319, G.339, T.340, W.345, W.357 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.319, B:W.345 Hydrogen bonds: B:T.318, B:T.340, B:T.340 MFU.6: 6 residues within 4Å: Chain B: G.78, K.79, G.100, T.101, W.106, W.120 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.106 Hydrogen bonds: B:K.79, B:T.101, B:T.101 MFU.7: 7 residues within 4Å: Chain B: G.173, V.174, G.195, T.196, D.197, W.201, W.216 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.201, B:W.216 Hydrogen bonds: B:V.174, B:T.196, B:T.196, B:T.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Paulenova, E. et al., The insight into the biology of five homologous lectins produced by the entomopathogenic bacterium and nematode symbiont Photorhabdus laumondii. Glycobiology (2025)

Release Date

2025-03-05

Peptides

Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 3/17: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 3/17

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