SMTL ID : 8qc3.1

Crystal structure of oxidoreductive sulfoquinovosidase from Arthrobacter sp. U41 (ArSqgA)in complex with co-factor NAD+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 25 residues within 4Å: Chain A: G.31, A.32, G.33, H.34, M.35, D.56, P.57, Q.58, S.61, A.94, S.95, P.96, N.97, T.99, H.100, E.119, K.120, P.121, A.146, E.148, K.185, V.186, W.189, H.206, H.334 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:A.32, A:H.34, A:M.35, A:S.61, A:S.95, A:N.97, A:E.119, A:V.186 Water bridges: A:A.36, A:A.36 Salt bridges: A:K.185, A:K.185 pi-Cation interactions: A:K.120 NAD.2: 25 residues within 4Å: Chain B: G.31, A.32, G.33, H.34, M.35, D.56, P.57, Q.58, S.61, A.94, S.95, P.96, N.97, T.99, H.100, E.119, K.120, P.121, A.146, E.148, K.185, V.186, W.189, E.202, H.334 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:M.35 Hydrogen bonds: B:A.32, B:H.34, B:M.35, B:S.61, B:S.95, B:K.120, B:E.148, B:V.186, B:E.202 Salt bridges: B:K.185, B:K.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaur, A. et al., Widespread Family of NAD + -Dependent Sulfoquinovosidases at the Gateway to Sulfoquinovose Catabolism. J.Am.Chem.Soc. (2023)

Release Date

2023-12-27

Peptides

Oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Oxidoreductase

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