SMTL ID : 8qch.4 (9 other biounits)

Human Adenosine deaminase-like protein in complex with compound AT8001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 5 residues within 4Å: Chain A: R.251, R.254, I.284, H.286, P.287 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.251 PEG.2: 3 residues within 4Å: Chain A: T.312, F.313, N.314 No protein-ligand interaction detected (PLIP)

1 x EIF: [(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate(Non-covalent)

EIF.3: 18 residues within 4Å: Chain A: H.26, L.27, N.28, F.67, F.70, H.74, R.105, S.106, T.107, Y.121, D.148, S.180, G.181, H.208, E.211, D.293, D.294 Ligands: ZN.4 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.67, A:F.70 Hydrogen bonds: A:N.28, A:N.28, A:G.29, A:T.107, A:T.107, A:Y.121, A:G.181, A:G.181 Salt bridges: A:H.74, A:E.211 pi-Stacking: A:H.26, A:F.67 pi-Cation interactions: A:H.208 Halogen bonds: A:D.148

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain A: H.24, H.26, H.208, D.293 Ligands: EIF.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.24, A:H.26, A:H.208, A:D.293, H2O.1

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: R.142, A.333, S.334, T.337 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.334, A:S.334, A:T.337, A:T.337, A:T.337 Salt bridges: A:R.142 SO4.6: 2 residues within 4Å: Chain A: S.318, D.322 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chazot, A. et al., The activation cascade of the broad-spectrum antiviral bemnifosbuvir characterized at atomic resolution. Plos Biol. (2024)

Release Date

2024-07-31

Peptides

Adenosine deaminase-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Adenosine deaminase-like protein

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