SMTL ID : 8qci.1

FCGBP D10 Assembly Segment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: G.63, N.65, N.79 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.65 NAG.2: 3 residues within 4Å: Chain A: F.150, N.152, T.154 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.154 Hydrogen bonds: A:T.154, A:T.154

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: R.167, D.172, P.173, C.175, E.221 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.167, A:R.167, A:C.175 Water bridges: A:D.172, A:E.221

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: D.7, N.139, D.141, N.143, N.146, D.147 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.7, A:D.141, A:N.143, A:D.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yeshaya, N. et al., VWD domain stabilization by autocatalytic Asp-Pro cleavage. Protein Sci. (2024)

Release Date

2024-03-06

Peptides

IgGFc-binding protein: A
IgGFc-binding protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

IgGFc-binding protein

IgGFc-binding protein