SMTL ID : 8qco.2 (1 other biounit)

E.coli IspE in complex with a ligand (3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: V.57, V.60, D.64, N.65, L.66, I.67, K.96, P.99, V.100, G.101, G.102, G.103, L.104, G.105, G.106, G.107, S.108, N.110, D.141 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.65, A:N.65, A:L.66, A:K.96, A:G.101, A:G.102, A:G.103, A:G.105, A:G.105, A:G.106, A:G.107, A:S.108 Water bridges: A:L.104, A:L.104, A:D.141

1 x QBI: ~{N}-[3-(4-azanyl-2-oxidanylidene-1~{H}-pyrimidin-5-yl)prop-2-ynyl]cyclopentanesulfonamide(Non-covalent)

QBI.2: 17 residues within 4Å: Chain A: K.10, N.12, L.15, G.24, Y.25, H.26, L.28, T.30, F.32, A.140, D.141, V.156, G.157, T.181, F.185, G.239, T.240 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.15, A:A.140, A:T.240 Hydrogen bonds: A:K.10, A:N.12, A:H.26, A:H.26, A:D.141, A:V.156 pi-Stacking: A:Y.25, A:F.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hamid, R. et al., IspE kinase as an anti-infective target: Role of a hydrophobic pocket in inhibitor binding. Structure (2024)

Release Date

2024-09-11

Peptides

4-diphosphocytidyl-2-C-methyl-D-erythritol kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

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