SMTL ID : 8qd3.3 (3 other biounits)

Ayg1p in complex with 1,3,6,8-Tetrahydroxynaphthalene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x QW8: naphthalene-1,3,6,8-tetrol(Non-covalent)

QW8.1: 15 residues within 4Å: Chain A: Y.54, G.203, L.204, D.205, G.206, R.214, L.273, S.274, Y.318, H.397, M.398, Y.400 Ligands: EDO.3, FLV.4, FLV.5 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.54, A:L.273, A:Y.400 Hydrogen bonds: A:G.203, A:L.204, A:D.205, A:G.206, A:G.206, A:R.214, A:R.214, A:S.274, A:Y.400 Water bridges: A:L.273

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 13 residues within 4Å: Chain A: S.274, A.275, Y.278, Y.279, G.300, Y.304, W.326, K.329, H.330, V.371, V.372, H.397 Ligands: EDO.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.329, A:K.329, A:H.397 Water bridges: A:A.275, A:G.300

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 12 residues within 4Å: Chain A: L.204, S.274, A.275, Y.318, I.322, W.326, V.371, H.397 Ligands: QW8.1, PGE.2, FLV.4, FLV.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.274 Water bridges: A:S.274, A:A.275

2 x FLV: FLAVIOLIN(Non-covalent)

FLV.4: 15 residues within 4Å: Chain A: Y.54, G.203, L.204, D.205, G.206, R.214, L.273, S.274, Y.318, H.397, M.398, Y.400 Ligands: QW8.1, EDO.3, FLV.5 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.54, A:L.273 Hydrogen bonds: A:G.203, A:L.204, A:D.205, A:G.206, A:R.214, A:R.214, A:S.274, A:Y.400, A:Y.400 Water bridges: A:Y.54, A:L.273 FLV.5: 15 residues within 4Å: Chain A: Y.54, G.203, L.204, D.205, G.206, R.214, L.273, S.274, Y.318, H.397, M.398, Y.400 Ligands: QW8.1, EDO.3, FLV.4 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.54, A:L.273 Hydrogen bonds: A:G.203, A:L.204, A:D.205, A:G.206, A:R.214, A:R.214, A:S.274, A:Y.400, A:Y.400 Water bridges: A:Y.54, A:Y.54, A:D.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmalhofer, M. et al., Polyketide Trimming Shapes Dihydroxynaphthalene-Melanin and Anthraquinone Pigments. Adv Sci (2024)

Release Date

2024-03-13

Peptides

Pigment biosynthesis protein yellowish-green 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Pigment biosynthesis protein yellowish-green 1

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