SMTL ID : 8qd5.1

AntI Ser245DHA (PSF)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: L.244, E.245, D.247, I.250 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.250 Water bridges: A:S.252 NA.5: 4 residues within 4Å: Chain B: L.244, E.245, D.247, I.250 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.250 Water bridges: B:S.252

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: R.40, G.189, L.190, D.191, S.192, I.260 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.40, A:R.40, A:L.190, A:D.191, A:S.192 EDO.6: 6 residues within 4Å: Chain B: R.40, G.189, L.190, D.191, S.192, I.260 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.40, B:R.40, B:L.190, B:D.191, B:S.192

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 8 residues within 4Å: Chain A: D.89, I.92, N.93, Y.115, Y.135, S.138, C.139, S.142 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.93, A:N.93, A:Y.115, A:S.142, A:S.142 PG4.7: 8 residues within 4Å: Chain B: D.89, I.92, N.93, Y.115, Y.135, S.138, C.139, S.142 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.93, B:N.93, B:S.142, B:S.142

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 7 residues within 4Å: Chain A: Y.36, F.37, M.121, D.191, R.298, L.300, I.344 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.300 Salt bridges: A:R.298 ACT.8: 7 residues within 4Å: Chain B: Y.36, F.37, M.121, D.191, R.298, L.300, I.344 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.300 Hydrogen bonds: B:Y.36 Salt bridges: B:R.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmalhofer, M. et al., Polyketide Trimming Shapes Dihydroxynaphthalene-Melanin and Anthraquinone Pigments. Adv Sci (2024)

Release Date

2024-03-13

Peptides

Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 15/17: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 15/17

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