SMTL ID : 8qd9.2 (1 other biounit)

Wdyg1p in complex with 1,3,6,8-Tetrahydroxynaphthalene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x QW8: naphthalene-1,3,6,8-tetrol(Non-covalent)

QW8.1: 8 residues within 4Å: Chain A: Y.56, L.210, F.272, S.273, H.395, M.396, E.398, F.402 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.56, A:F.402 Hydrogen bonds: A:Y.56, A:S.273, A:S.273 Water bridges: A:G.205, A:T.274 pi-Stacking: A:Y.56, A:Y.56

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: Q.89, F.92, E.96, K.137, Y.140 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.96, A:K.137, A:K.137 EDO.3: 3 residues within 4Å: Chain A: Y.24, N.365, K.391 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.24, A:Y.24, A:N.365, A:K.391 Water bridges: A:K.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmalhofer, M. et al., Polyketide Trimming Shapes Dihydroxynaphthalene-Melanin and Anthraquinone Pigments. Adv Sci (2024)

Release Date

2024-03-13

Peptides

Yellowish-green 1-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Yellowish-green 1-like protein

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