- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.98 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
- 4 x OXM: OXAMIC ACID
OXM.2: 8 residues within 4Å:- Chain A: R.88, N.120, L.147, R.151, H.175, A.220, T.230
- Ligands: NAI.1
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.120, A:T.230, A:T.230
- Salt bridges: A:R.88, A:R.151, A:H.175
OXM.8: 8 residues within 4Å:- Chain B: Q.82, N.120, R.151, H.175, A.220, I.224, T.230
- Ligands: NAI.7
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.82, B:N.120, B:T.230
- Salt bridges: B:R.151, B:H.175
OXM.13: 6 residues within 4Å:- Chain C: N.120, R.151, H.175, A.220, T.230
- Ligands: NAI.12
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:N.120, C:T.230, C:T.230, C:T.230
- Salt bridges: C:R.151, C:H.175
OXM.18: 7 residues within 4Å:- Chain D: N.120, L.147, R.151, H.175, A.220, T.230
- Ligands: NAI.17
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:N.120, D:T.230
- Salt bridges: D:R.151, D:H.175
- 3 x PGE: TRIETHYLENE GLYCOL
PGE.3: 4 residues within 4Å:- Chain A: W.130, P.136, K.137, H.138
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.137, A:H.138, A:H.138
PGE.10: 9 residues within 4Å:- Chain B: I.19, S.20, G.23, K.24, L.236
- Chain D: I.19, S.20, G.23, L.236
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.23, B:K.24, B:K.24
PGE.14: 8 residues within 4Å:- Chain A: I.19, S.20, G.23, K.24
- Chain C: I.19, G.23, K.24, L.236
No protein-ligand interaction detected (PLIP)- 7 x SO4: SULFATE ION
SO4.4: 4 residues within 4Å:- Chain A: A.181, W.183, K.210, H.213
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.213
SO4.5: 5 residues within 4Å:- Chain A: R.153, H.168
- Chain D: S.165, S.166, H.168
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain D- Salt bridges: A:R.153, A:H.168, D:H.168
SO4.6: 2 residues within 4Å:- Chain A: E.37, K.63
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:K.63
SO4.11: 4 residues within 4Å:- Chain B: R.153, H.168
- Chain C: S.166, H.168
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain C- Salt bridges: B:R.153, B:H.168, C:H.168
SO4.15: 5 residues within 4Å:- Chain B: S.165, H.168
- Chain C: R.153, H.168, I.252
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain B- Salt bridges: C:R.153, C:H.168, B:H.168
SO4.16: 3 residues within 4Å:- Chain C: P.136, K.137, H.138
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:K.137, C:H.138
- Salt bridges: C:K.137, C:H.138
SO4.19: 4 residues within 4Å:- Chain A: H.168
- Chain D: R.153, H.168, W.170
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain A- Salt bridges: D:R.153, D:H.168, A:H.168
- 1 x PEG: DI(HYDROXYETHYL)ETHER
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Van Gysel, M. et al., Crystal structure of a truncated human L-Lactate Dehydrogenase B protein in complex with NADH and oxamate. To Be Published
- Release Date
- 2024-09-11
- Peptides
- L-lactate dehydrogenase B chain: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.98 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
- 4 x OXM: OXAMIC ACID
- 3 x PGE: TRIETHYLENE GLYCOL
- 7 x SO4: SULFATE ION
- 1 x PEG: DI(HYDROXYETHYL)ETHER
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Van Gysel, M. et al., Crystal structure of a truncated human L-Lactate Dehydrogenase B protein in complex with NADH and oxamate. To Be Published
- Release Date
- 2024-09-11
- Peptides
- L-lactate dehydrogenase B chain: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D