SMTL ID : 8qf2.1

Beta-L-Arabinofurano-cyclitol Aziridines are Cysteine-directed Broad-spectrum Inhibitors and Activity-based Probes for Retaining Beta-L-arabinofuranosidases

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: E.338, C.340, C.417, C.418 Ligands: UI5.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.338, A:C.340, A:C.417, A:C.418

1 x UI5: (1~{S},2~{S},3~{S},4~{R})-4-azanyl-3-(hydroxymethyl)cyclopentane-1,2-diol(Covalent)

UI5.2: 12 residues within 4Å: Chain A: F.73, H.142, Y.145, H.194, H.270, V.272, E.322, E.338, Y.386, C.415, C.417 Ligands: ZN.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.142, A:H.194, A:E.338

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borlandelli, V. et al., beta-l- Arabino furano-cyclitol Aziridines Are Covalent Broad-Spectrum Inhibitors and Activity-Based Probes for Retaining beta-l-Arabinofuranosidases. Acs Chem.Biol. (2023)

Release Date

2023-12-13

Peptides

Non-reducing end beta-L-arabinofuranosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-reducing end beta-L-arabinofuranosidase

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