SMTL ID : 8qh1.1

Crystal structure of the SARS-CoV-2 RBD from the Omicron BA4 variant with the antibody Cv2.3194

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: F.8, D.9, F.12, N.13, L.38 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.12, A:L.38 Hydrogen bonds: A:N.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Planchais, C. et al., Pan-neutralizing antibody isolated from a COVID patient. To Be Published

Release Date

2024-06-19

Peptides

Spike glycoprotein: A
Cv2.3194 heavy chain: B
IGK@ protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
H

C
L

Spike glycoprotein

Cv2.3194 heavy chain

IGK@ protein

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