SMTL ID : 8qhc.1

Cryo-EM structure of SidH from Legionella pneumophila in complex with LubX

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.26, T.62, D.81 Ligands: GTP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.26, A:T.62

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 21 residues within 4Å: Chain A: V.21, D.22, H.23, G.24, K.25, T.26, T.27, F.47, I.61, T.62, C.82, P.83, G.84, N.136, K.137, D.139, M.140, S.174, A.175, L.176 Ligands: MG.1 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:D.22, A:H.23, A:G.24, A:K.25, A:T.26, A:T.26, A:T.27, A:T.27, A:T.62, A:T.62, A:G.84, A:N.136, A:K.137, A:K.137, A:S.174, A:A.175, A:L.176 Salt bridges: A:K.25, A:K.25, A:D.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, R. et al., Structural basis for the toxicity of Legionella pneumophila effector SidH. Nat Commun (2023)

Release Date

2023-10-11

Peptides

Elongation factor Tu: A
Protein SidH: C
E3 ubiquitin--protein ligase: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
A

D
D

Elongation factor Tu

Protein SidH

E3 ubiquitin--protein ligase

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