SMTL ID : 8qhf.1

Corynebacterium glutamicum mycoloyltransferase C acyl-enzyme intermediate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 4 residues within 4Å: Chain A: E.225, K.228, L.229, D.232 No protein-ligand interaction detected (PLIP)

1 x VBL: (2~{S},3~{R})-2-pentyloctane-1,3-diol(Covalent)

VBL.2: 8 residues within 4Å: Chain A: S.189, S.213, Y.226, L.229, E.278, I.309, A.312, T.313 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.226, A:L.229, A:I.309, A:A.312 Hydrogen bonds: A:E.278, A:E.278

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: S.219, S.220, L.221, R.245 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.221 Salt bridges: A:R.245

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: R.351 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: D.48, S.49 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: N.152, A.153 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain A: N.84 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lesur, E. et al., Synthetic mycolates derivatives to decipher protein mycoloylation, a unique post-translational modification in bacteria. J.Biol.Chem. (2025)

Release Date

2025-02-12

Peptides

Cmt1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cmt1