- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 5 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 2 residues within 4Å:- Chain A: K.25, R.27
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:K.25, A:R.27
SO4.3: 4 residues within 4Å:- Chain A: F.73, D.74, R.75, E.76
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.74, A:R.75, A:E.76
- Salt bridges: A:R.75
SO4.12: 2 residues within 4Å:- Chain C: K.25, R.27
3 PLIP interactions:3 interactions with chain C- Water bridges: C:R.27
- Salt bridges: C:K.25, C:R.27
SO4.13: 4 residues within 4Å:- Chain C: F.73, D.74, R.75, E.76
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:F.73, C:D.74, C:R.75, C:E.76
- Salt bridges: C:R.75
SO4.20: 3 residues within 4Å:- Chain D: G.159, K.160, E.170
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:K.160
- Salt bridges: D:K.153
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.4: 13 residues within 4Å:- Chain B: I.181, P.199, T.346, C.347, G.348, Q.349, C.350, C.353, S.391, I.392, C.393, L.395, G.396
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.347, B:C.350, B:C.353, B:C.393
SF4.15: 13 residues within 4Å:- Chain D: I.181, P.199, T.346, C.347, G.348, Q.349, C.350, C.353, S.391, I.392, C.393, L.395, G.396
4 PLIP interactions:4 interactions with chain D,- Metal complexes: D:C.347, D:C.350, D:C.353, D:C.393
- 2 x FNR: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL(Non-covalent)
FNR.5: 20 residues within 4Å:- Chain B: G.65, R.66, G.67, K.76, N.92, D.94, E.95, S.96, Y.180, I.181, G.183, E.184, E.185, V.218, N.219, N.220, T.223, G.394, L.395
- Ligands: AP0.6
23 PLIP interactions:23 interactions with chain B- Hydrophobic interactions: B:Y.180, B:I.181, B:E.184, B:E.184, B:L.395
- Hydrogen bonds: B:R.66, B:G.67, B:N.92, B:D.94, B:E.95, B:S.96, B:G.183, B:E.185, B:N.219, B:N.220, B:N.220, B:T.223
- Water bridges: B:K.76, B:N.92, B:N.92, B:G.183, B:G.183
- Salt bridges: B:K.76
FNR.16: 20 residues within 4Å:- Chain D: G.65, R.66, G.67, K.76, N.92, D.94, E.95, S.96, Y.180, I.181, G.183, E.184, E.185, V.218, N.219, N.220, T.223, G.394, L.395
- Ligands: AP0.17
22 PLIP interactions:22 interactions with chain D- Hydrophobic interactions: D:Y.180, D:I.181, D:E.184, D:E.184, D:L.395
- Hydrogen bonds: D:R.66, D:G.67, D:N.92, D:D.94, D:E.95, D:S.96, D:G.183, D:E.185, D:N.220, D:N.220
- Water bridges: D:G.67, D:G.70, D:N.92, D:N.92, D:G.183, D:G.183
- Salt bridges: D:K.76
- 2 x AP0: ACETYL PYRIDINE ADENINE DINUCLEOTIDE, REDUCED(Non-covalent)
AP0.6: 16 residues within 4Å:- Chain B: G.67, G.68, A.69, F.71, K.76, E.95, S.96, E.97, Y.180, E.185, Y.205, P.206, V.207, L.297, T.319
- Ligands: FNR.5
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:E.97, B:Y.180, B:T.319
- Hydrogen bonds: B:K.76, B:S.96, B:E.97
- Water bridges: B:Y.205, B:Y.205, B:T.319, B:G.394
- pi-Stacking: B:F.71, B:Y.205, B:Y.205
AP0.17: 17 residues within 4Å:- Chain D: G.67, G.68, A.69, F.71, K.76, F.79, E.95, S.96, E.97, Y.180, E.185, Y.205, P.206, V.207, L.297, T.319
- Ligands: FNR.16
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:E.97, D:Y.180, D:T.319
- Hydrogen bonds: D:K.76, D:S.96, D:E.97, D:V.218
- Water bridges: D:E.184, D:E.184, D:T.319, D:G.394
- pi-Stacking: D:F.71, D:Y.205, D:Y.205
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 7 residues within 4Å:- Chain B: Y.34, D.37, G.38, G.39, E.116, P.228, F.229
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Y.40, B:E.116, B:S.232, B:S.232
- Water bridges: B:R.22, B:D.37
GOL.8: 5 residues within 4Å:- Chain B: G.159, K.160, E.170
- Chain D: K.25, R.27
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain B- Hydrogen bonds: D:R.27, B:K.160
- Water bridges: B:L.158, B:L.158, B:K.160
GOL.9: 3 residues within 4Å:- Chain B: P.84, G.85, R.87
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.85, B:R.87, B:R.87
- Water bridges: B:G.126
GOL.18: 7 residues within 4Å:- Chain D: Y.34, D.37, G.38, G.39, E.116, P.228, F.229
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:E.116, D:S.232, D:S.232
- Water bridges: D:R.22, D:D.37, D:Y.40, D:Y.40
GOL.19: 1 residues within 4Å:- Chain D: R.87
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.87, D:R.87
- Water bridges: D:G.85
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wohlwend, D. et al., Structures of 3-acetylpyridine adenine dinucleotide and ADP-ribose bound to the electron input module of respiratory complex I. Structure (2024)
- Release Date
- 2024-04-03
- Peptides
- NADH-quinone oxidoreductase subunit E: AC
NADH-quinone oxidoreductase subunit F: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x FNR: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL(Non-covalent)
- 2 x AP0: ACETYL PYRIDINE ADENINE DINUCLEOTIDE, REDUCED(Non-covalent)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wohlwend, D. et al., Structures of 3-acetylpyridine adenine dinucleotide and ADP-ribose bound to the electron input module of respiratory complex I. Structure (2024)
- Release Date
- 2024-04-03
- Peptides
- NADH-quinone oxidoreductase subunit E: AC
NADH-quinone oxidoreductase subunit F: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D