SMTL ID : 8qiz.1

Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124N soaked with with penta-mannuronic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.13 Å

Oligo State

monomer

Ligands

1 x BEM- LGU- BEM- BEM- BEM- BEM: beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid

BEM-LGU-BEM-BEM-BEM-BEM.1: 21 residues within 4Å: Chain A: K.20, Q.22, S.26, L.28, R.62, R.66, E.75, Q.108, N.110, A.114, P.115, R.118, T.139, R.141, F.151, K.153, Y.200, K.202, Y.206, N.208, N.209 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.118, A:K.153, A:N.209, A:K.20, A:Q.22 Water bridges: A:E.103, A:E.103, A:E.103, A:R.118, A:T.139, A:Y.200 Salt bridges: A:K.20, A:R.66

1 x BEM- BEM- BEM- BEM: beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid

BEM-BEM-BEM-BEM.2: 15 residues within 4Å: Chain A: E.1, S.42, Y.45, Q.47, D.48, Y.51, Q.53, Q.55, V.93, P.95, A.161, G.162, A.163, R.218, K.220 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilkens, C., Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124 soaked with with penta-mannuronic acid. To Be Published

Release Date

2025-02-05

Peptides

Alginate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alginate lyase

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