SMTL ID : 8qk9.1

Structure of E. coli LpxH in complex with JEDI-1444

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.8, H.10, D.41, H.197 Ligands: MN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.8, A:H.10, A:D.41, A:H.197, H2O.2 MN.2: 6 residues within 4Å: Chain A: D.8, D.41, N.79, H.114, H.195 Ligands: MN.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.41, A:H.114, A:H.195, H2O.2

1 x VQ9: 2-[methyl(methylsulfonyl)amino]-~{N}-[4-[4-[3-(trifluoromethyl)phenyl]piperazin-1-yl]sulfonylphenyl]benzamide

VQ9.3: 18 residues within 4Å: Chain A: A.45, W.46, N.79, R.80, F.82, L.83, Y.125, F.128, V.132, L.137, Q.138, F.141, A.153, M.156, R.157, S.160, A.170, H.195 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.125, A:F.128, A:F.128, A:M.156, A:R.157 Hydrogen bonds: A:W.46, A:N.79, A:R.80, A:S.160, A:S.160 pi-Stacking: A:Y.125, A:F.141 pi-Cation interactions: A:R.80 Halogen bonds: A:V.132, A:L.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huseby, D.L. et al., Antibiotic class with potent in vivo activity targeting lipopolysaccharide synthesis in Gram-negative bacteria. Proc.Natl.Acad.Sci.USA (2024)

Release Date

2024-04-17

Peptides

UDP-2,3-diacylglucosamine hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-2,3-diacylglucosamine hydrolase

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