SMTL ID : 8qkt.2 (1 other biounit)

Structure of a nucleosome composed of a palindromic 167-base pair blunt-ended DNA fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.26 Å

Oligo State

hetero-2-2-1-1-1-1-mer

Ligands

14 x MN: MANGANESE (II) ION(Non-functional Binders)

MN.1: 1 residues within 4Å: Chain I: G.111 No protein-ligand interaction detected (PLIP) MN.2: 1 residues within 4Å: Chain I: G.23 No protein-ligand interaction detected (PLIP) MN.3: 2 residues within 4Å: Chain I: G.35, C.36 No protein-ligand interaction detected (PLIP) MN.4: 1 residues within 4Å: Chain I: G.50 No protein-ligand interaction detected (PLIP) MN.5: 2 residues within 4Å: Chain I: G.81, G.82 No protein-ligand interaction detected (PLIP) MN.6: 2 residues within 4Å: Chain I: C.145, G.146 No protein-ligand interaction detected (PLIP) MN.7: 2 residues within 4Å: Chain J: G.23, G.24 No protein-ligand interaction detected (PLIP) MN.8: 1 residues within 4Å: Chain J: G.50 No protein-ligand interaction detected (PLIP) MN.9: 1 residues within 4Å: Chain J: G.77 No protein-ligand interaction detected (PLIP) MN.10: 1 residues within 4Å: Chain J: G.134 No protein-ligand interaction detected (PLIP) MN.11: 1 residues within 4Å: Chain J: A.164 No protein-ligand interaction detected (PLIP) MN.12: 1 residues within 4Å: Chain J: G.122 No protein-ligand interaction detected (PLIP) MN.13: 2 residues within 4Å: Chain J: G.104, G.105 No protein-ligand interaction detected (PLIP) MN.14: 2 residues within 4Å: Chain J: G.81, G.82 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, Z. et al., Structure of a nucleosome composed of a palindromic 167-base pair blunt-ended DNA fragment. To Be Published

Release Date

2023-10-18

Peptides

Histone H3.1: AE
Histone H4: BF
Histone H2A: C
Histone H2B type 1-J: D
Histone H2A: G
Histone H2B type 1-J: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
KKK

E
OOO

B
LLL

F
PPP

C
MMM

D
NNN

G
QQQ

H
RRR

Histone H3.1

Histone H4

Histone H2A

Histone H2B type 1-J

Histone H2A

Histone H2B type 1-J

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