SMTL ID : 8qlp.1

CryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain B: N.468, I.507 Chain C: U.1, G.2, A.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:I.507 MG.2: 4 residues within 4Å: Chain F: N.468, I.507 Chain G: U.1, A.3 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:I.507 MG.3: 5 residues within 4Å: Chain J: N.468, I.507 Chain K: U.1, G.2, A.3 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:I.507 MG.4: 4 residues within 4Å: Chain N: N.468, I.507 Chain O: U.1, A.3 1 PLIP interactions: 1 interactions with chain N Metal complexes: N:I.507

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Finocchio, G. et al., Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA. Nucleic Acids Res. (2024)

Release Date

2024-01-31

Peptides

Toll/interleukin-1 receptor domain-containing protein: AEIM
Short prokaryotic Argonaute: BFJN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

I
I

M
M

B
B

F
F

J
J

N
N

Toll/interleukin-1 receptor domain-containing protein

Short prokaryotic Argonaute

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