SMTL ID : 8qls.1

Human MST3 (STK24) kinase in complex with inhibitor MR26

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x VYH: 8-(4-azanylbutyl)-6-[2-chloranyl-4-(6-methylpyridin-2-yl)phenyl]-2-(3-morpholin-4-ylpropylamino)pyrido[2,3-d]pyrimidin-7-one(Non-covalent)

VYH.1: 21 residues within 4Å: Chain A: I.40, F.45, V.48, A.61, K.63, I.77, E.80, I.81, L.84, I.107, M.109, E.110, Y.111, L.112, G.113, G.115, A.158, N.159, L.161, D.172 Ligands: EDO.7 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.45, A:A.61, A:K.63, A:E.80, A:E.80, A:I.81, A:L.84, A:I.107, A:I.107, A:L.161 Hydrogen bonds: A:L.112, A:L.112, A:A.158 Water bridges: A:S.44, A:Y.111, A:N.159 Halogen bonds: A:A.61

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: E.164, H.165 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.165 EDO.3: 4 residues within 4Å: Chain A: F.194, W.195, P.227, S.230 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.230 EDO.4: 5 residues within 4Å: Chain A: D.53, T.56, K.58, V.60, Y.96 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.56, A:T.56 EDO.5: 2 residues within 4Å: Chain A: Q.57, V.59 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain A: K.276, L.279, K.280 No protein-ligand interaction detected (PLIP) EDO.7: 5 residues within 4Å: Chain A: I.40, G.41, S.116, D.119 Ligands: VYH.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.116, A:S.116 Water bridges: A:K.42, A:S.116 EDO.8: 3 residues within 4Å: Chain A: A.223, R.224, Y.253 No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain A: K.149, K.150, I.151, D.207, S.208 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.149, A:S.208 Water bridges: A:S.208, A:S.208 EDO.10: 1 residues within 4Å: Chain A: R.55 No protein-ligand interaction detected (PLIP) EDO.11: 1 residues within 4Å: Chain A: H.165 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.165 EDO.12: 1 residues within 4Å: Chain A: K.282 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rak, M. et al., Development of Selective Pyrido[2,3- d ]pyrimidin-7(8 H )-one-Based Mammalian STE20-Like (MST3/4) Kinase Inhibitors. J.Med.Chem. (2024)

Release Date

2023-11-08

Peptides

Serine/threonine-protein kinase 24: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase 24

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