SMTL ID : 8qlt.1

Human MST3 (STK24) kinase in complex with inhibitor MR30

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x VZ2: 8-(4-azanylbutyl)-6-[2-chloranyl-4-(6-methylpyridin-2-yl)phenyl]-2-[3-(2-oxidanylidenepyrrolidin-1-yl)propylamino]pyrido[2,3-d]pyrimidin-7-one(Non-covalent)

VZ2.1: 20 residues within 4Å: Chain A: I.40, V.48, A.61, K.63, I.77, E.80, I.81, L.84, I.107, M.109, E.110, Y.111, L.112, G.113, G.115, D.119, A.158, N.159, L.161, D.172 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:A.61, A:K.63, A:E.80, A:E.80, A:I.81, A:L.84, A:I.107, A:I.107, A:L.161 Hydrogen bonds: A:L.112, A:L.112, A:A.158 Water bridges: A:G.41, A:G.114, A:N.159 pi-Cation interactions: A:K.63

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: Y.111, G.113 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.164 EDO.3: 3 residues within 4Å: Chain A: D.127, T.129, Q.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.127 Water bridges: A:Q.130 EDO.4: 6 residues within 4Å: Chain A: F.34, D.53, T.56, K.58, V.60, Y.96 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.53, A:T.56, A:T.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rak, M. et al., Development of Selective Pyrido[2,3- d ]pyrimidin-7(8 H )-one-Based Mammalian STE20-Like (MST3/4) Kinase Inhibitors. J.Med.Chem. (2024)

Release Date

2023-11-08

Peptides

Serine/threonine-protein kinase 24: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase 24

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