SMTL ID : 8qn0.2 (1 other biounit)

Soluble epoxide hydrolase in complex with RK3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x WJ5: (3~{a}~{R},6~{a}~{S})-~{N}-[(2,4-dichlorophenyl)methyl]-5-(4-methylphenyl)sulfonyl-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrole-2-carboxamide(Non-covalent)

WJ5.1: 18 residues within 4Å: Chain A: F.70, D.138, W.139, M.142, Y.146, T.163, P.164, I.166, F.184, Y.186, Q.187, M.222, Y.269, V.301, L.302, M.306, H.327, W.328 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.139, A:V.301, A:W.328 Hydrogen bonds: A:D.138, A:Y.186 pi-Stacking: A:H.327

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: S.41, H.42, G.43, F.55, E.57 No protein-ligand interaction detected (PLIP) EDO.3: 7 residues within 4Å: Chain A: L.53, M.96, K.97, L.116, E.119, M.120, W.268 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.97, A:E.119 EDO.4: 7 residues within 4Å: Chain A: T.33, S.34, C.35, N.36, D.39, M.40, P.82 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.36, A:N.36 Water bridges: A:D.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, F. et al., Photosensitization enables Pauson-Khand-type reactions with nitrenes. Science (2024)

Release Date

2024-02-14

Peptides

Bifunctional epoxide hydrolase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bifunctional epoxide hydrolase 2

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