SMTL ID : 8qn9.1

OPR3 variant - R283E

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 8 residues within 4Å: Chain A: T.39, F.80, W.114, H.194, Y.196, H.250, Y.376 Ligands: FMN.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.80 Hydrogen bonds: A:Y.196 Water bridges: A:H.194

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.369, Y.370, N.371, R.372, K.373 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.372, A:K.373 Water bridges: A:K.369 Salt bridges: A:K.369, A:R.372, A:K.373

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.3: 23 residues within 4Å: Chain A: A.36, P.37, M.38, T.39, R.40, E.69, G.70, Q.112, H.191, H.194, R.243, T.286, S.325, G.326, G.327, Y.328, Y.347, G.348, R.349, I.352, F.375, Y.376 Ligands: MPD.1 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:M.38, A:R.349, A:F.375, A:Y.376 Hydrogen bonds: A:T.39, A:T.39, A:G.70, A:Q.112, A:Q.112, A:H.191, A:R.243, A:R.243, A:G.326, A:G.327, A:G.348, A:R.349 Water bridges: A:H.194, A:Y.328, A:Y.328, A:L.350 Salt bridges: A:R.349

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kerschbaumer, B. et al., Analysis of homodimer formation in 12-oxophytodienoate reductase 3 in solutio and crystallo challenges the physiological role of the dimer. Sci Rep (2024)

Release Date

2024-08-14

Peptides

12-oxophytodienoate reductase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

12-oxophytodienoate reductase 3

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