SMTL ID : 8qnc.1

Crystal structure of ancestral L-galactono-1,4-lactone dehydrogenase: A113G variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: W.15, R.50, P.51, V.52, G.53, S.54, G.55, L.56, S.57, P.58, L.61, A.62, L.71, A.91, G.113, S.114, I.115, Q.118, Q.119, G.121, G.122, Q.125, V.126, A.128, H.129, L.173, G.174, G.177, V.178, V.179, C.340, R.388, H.453, A.455 Ligands: GOL.2, PEG.4 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:W.15, A:W.15, A:I.115, A:I.115, A:I.115 Hydrogen bonds: A:R.50, A:G.53, A:S.54, A:G.55, A:L.56, A:S.57, A:S.114, A:Q.118, A:Q.119, A:Q.125, A:H.129, A:H.129, A:V.179, A:V.179, A:R.388, A:R.388 Water bridges: A:S.57, A:A.62, A:I.115, A:I.115, A:G.121, A:G.122 pi-Cation interactions: A:K.456, A:K.456

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: S.114, F.338, C.340, Q.344, E.386, R.388, K.456 Ligands: FAD.1, PEG.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.114, A:Q.344, A:E.386, A:R.388, A:R.388, A:K.456 Water bridges: A:E.386, A:E.386 GOL.3: 7 residues within 4Å: Chain A: P.399, A.400, Y.401, F.409, G.449, A.451, R.476 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.401, A:Y.401 Water bridges: A:A.451

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 10 residues within 4Å: Chain A: N.14, W.15, S.16, L.56, S.57, P.58, Q.344, V.346 Ligands: FAD.1, GOL.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.15, A:S.16, A:S.16, A:S.57, A:Q.344

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boverio, A. et al., Crystal structure of ancestral L-galactono-1,4-lactone dehydrogenase: A113G variant. To Be Published

Release Date

2024-05-01

Peptides

L-galactono-1,4-lactone dehydrogenase: A113G variant: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L-galactono-1,4-lactone dehydrogenase: A113G variant