SMTL ID : 8qnw.1

OPR3 variant with redesigned loop 6 (8aa)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: A.39, P.40, M.41, T.42, G.73, Q.115, H.194, H.197, R.246, T.289, S.319, G.320, G.321, Y.341, G.342, R.343, F.369, Y.370 Ligands: MPD.2 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:M.41, A:R.343, A:F.369, A:F.369, A:Y.370 Hydrogen bonds: A:P.40, A:T.42, A:T.42, A:G.73, A:Q.115, A:Q.115, A:R.246, A:R.246, A:S.319, A:G.321, A:G.342, A:R.343 Water bridges: A:G.320, A:G.320, A:G.320, A:S.340, A:R.343, A:R.343, A:L.344 Salt bridges: A:R.343

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 5 residues within 4Å: Chain A: F.83, Y.199, H.253, Y.370 Ligands: FMN.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.199, A:Y.199, A:H.253

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: Y.364, N.365, R.366, K.367 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.366, A:K.367 Water bridges: A:K.363, A:K.363, A:K.363, A:R.366, A:R.366 Salt bridges: A:K.363, A:R.366, A:K.367

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kerschbaumer, B. et al., Crystal structures of OPR3 wildtype and variants in complex with NAD(P)H. To Be Published

Release Date

2025-04-09

Peptides

12-oxophytodienoate reductase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

12-oxophytodienoate reductase 3

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