SMTL ID : 8qo7.1

OPR3 variant R283E in complex with NADPH4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: A.36, P.37, M.38, T.39, G.70, Q.112, H.191, H.194, R.243, T.286, S.325, G.326, G.327, Y.347, G.348, R.349, F.375, Y.376 Ligands: 5J8.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:M.38, A:R.349, A:F.375 Hydrogen bonds: A:P.37, A:T.39, A:T.39, A:G.70, A:Q.112, A:Q.112, A:R.243, A:R.243, A:S.325, A:G.327, A:G.348, A:R.349 Water bridges: A:G.326, A:G.326, A:G.326, A:S.346, A:R.349, A:L.350 Salt bridges: A:R.349

2 x 5J8: [[(2R,3S,4R,5R)-5-(5-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate(Non-covalent)

5J8.2: 10 residues within 4Å: Chain A: T.39, F.80, W.114, H.191, H.194, Y.196, H.250, R.372, Y.376 Ligands: FMN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.80 Hydrogen bonds: A:W.114, A:Y.196 Water bridges: A:R.372, A:R.372, A:R.372 Salt bridges: A:R.372, A:R.372 5J8.3: 3 residues within 4Å: Chain A: Q.229, K.271, H.275 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.229, A:Q.229 Water bridges: A:S.233, A:S.233, A:S.233, A:H.275 Salt bridges: A:H.275 pi-Stacking: A:H.275, A:H.275

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.349, Y.370, R.372 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.349 Salt bridges: A:R.349, A:R.372

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kerschbaumer, B. et al., Crystal structures of OPR3 wildtype and variants in complex with NAD(P)H. To Be Published

Release Date

2025-04-09

Peptides

12-oxophytodienoate reductase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

12-oxophytodienoate reductase 3

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