SMTL ID : 8qou.1 (1 other biounit)

Reactive intermediate deaminase A mutant - R107K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-trimer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 8 residues within 4Å: Chain A: Y.24, G.38, P.119, E.125 Chain B: F.92, N.96, K.110, A.112 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.110, B:K.110, A:G.38 PEG.4: 8 residues within 4Å: Chain B: Y.24, G.38, P.119, E.125 Chain C: F.92, N.96, K.110, A.112 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:K.110, C:K.110, B:G.38 PEG.7: 8 residues within 4Å: Chain A: F.92, N.96, K.110, A.112 Chain C: Y.24, G.38, P.119, E.125 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:K.110, A:K.110, C:G.38

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: N.78, G.133, P.134, L.135 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.78, A:N.78, A:L.135, A:L.135 Water bridges: A:G.133 EDO.5: 4 residues within 4Å: Chain B: N.78, G.133, P.134, L.135 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.78, B:N.78, B:L.135, B:L.135 Water bridges: B:G.133 EDO.8: 4 residues within 4Å: Chain C: N.78, G.133, P.134, L.135 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.78, C:N.78, C:L.135, C:L.135 Water bridges: C:T.77, C:G.133

3 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 4 residues within 4Å: Chain A: G.1, S.2, H.3, M.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.3 NI.6: 4 residues within 4Å: Chain B: G.1, S.2, H.3, M.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.3 NI.9: 4 residues within 4Å: Chain C: G.1, S.2, H.3, M.4 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rizzi, G. et al., Reactive intermediate deaminase A mutant - R107K. To Be Published

Release Date

2024-07-10

Peptides

2-iminobutanoate/2-iminopropanoate deaminase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

2-iminobutanoate/2-iminopropanoate deaminase

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