SMTL ID : 8qq9.1

human carbonic anhydrase I in complex with 1-benzyl-3-(1-hydroxy-3,4-dihydro-1H-benzo[c][1,2]oxaborinin-7-yl)thiourea

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.95, H.97, H.120, T.200 Ligands: WHK.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.95, A:H.97, A:H.120 ZN.3: 5 residues within 4Å: Chain B: H.95, H.97, H.120, T.200 Ligands: WHK.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.95, B:H.97, B:H.120

2 x WHK: 1-[1,1-bis(oxidanyl)-3,4-dihydro-2,1$l^{4}-benzoxaborinin-7-yl]-3-(phenylmethyl)thiourea(Non-covalent)

WHK.2: 14 residues within 4Å: Chain A: H.68, Q.93, H.95, H.97, H.120, A.122, A.136, V.144, L.199, T.200, H.201, P.203, W.210 Ligands: ZN.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.122, A:A.136, A:V.144, A:L.199 Hydrogen bonds: A:Q.93, A:Q.93, A:T.200, A:H.201, A:H.201 Water bridges: A:H.201, A:P.202 pi-Stacking: A:H.95 WHK.4: 14 residues within 4Å: Chain B: H.68, Q.93, H.95, H.97, H.120, A.122, A.136, V.144, L.199, T.200, H.201, P.203, W.210 Ligands: ZN.3 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:A.122, B:A.136, B:V.144, B:L.199, B:P.203 Hydrogen bonds: B:Q.93, B:Q.93, B:T.200, B:H.201, B:H.201, B:H.201 pi-Stacking: B:H.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Giovannuzzi, S. et al., Benzoxaborinine, New Chemotype for Carbonic Anhydrase Inhibition: Ex Novo Synthesis, Crystallography, In Silico Studies, and Anti-Melanoma Cell Line Activity. J.Med.Chem. (2024)

Release Date

2024-10-16

Peptides

Carbonic anhydrase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

Carbonic anhydrase 1

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