SMTL ID : 8qqe.1

Crystal structure of the complex between DMC1 and the PhePP domain of BRCA2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.46 Å

Oligo State

hetero-8-8-mer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: Q.199, S.224, I.225, M.226, A.227, L.228 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:I.225 MG.4: 6 residues within 4Å: Chain E: Q.199, S.224, I.225, M.226, A.227, L.228 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:I.225 MG.7: 6 residues within 4Å: Chain I: Q.199, S.224, I.225, M.226, A.227, L.228 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:I.225 MG.10: 6 residues within 4Å: Chain M: Q.199, S.224, I.225, M.226, A.227, L.228 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:I.225

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: T.130, G.131, K.132, T.133, Q.134 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain B: E.127, F.128, T.130, K.132, T.133 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain E: T.130, G.131, K.132, T.133, Q.134 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain F: E.127, F.128, T.130, K.132, T.133 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain I: T.130, G.131, K.132, T.133, Q.134 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain J: E.127, F.128, T.130, K.132, T.133 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain M: T.130, G.131, K.132, T.133, Q.134 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain N: E.127, F.128, T.130, K.132, T.133 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miron, S. et al., DMC1 and RAD51 bind FxxA and FxPP motifs of BRCA2 via two separate interfaces. Nucleic Acids Res. (2024)

Release Date

2024-06-19

Peptides

Meiotic recombination protein DMC1/LIM15 homolog: ABEFIJMN
Breast cancer type 2 susceptibility protein: CDGHKLOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
A

F
B

I
A

J
B

M
A

N
B

C
C

D
D

G
C

H
D

K
C

L
D

O
C

P
D

Meiotic recombination protein DMC1/LIM15 homolog

Breast cancer type 2 susceptibility protein