SMTL ID : 8qqi.1

E.coli DNA gyrase in complex with 217 bp substrate DNA and LEI-800

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x LRL: ~{N}-[[(2~{S},5~{R})-5-(4-pyridin-3-ylphenyl)pyrrolidin-2-yl]methyl]isoquinoline-5-sulfonamide(Non-covalent)

LRL.1: 15 residues within 4Å: Chain A: K.42, H.45, T.88, M.92, F.96, S.97, I.112, N.169, G.170, S.171, S.172, Y.266, Q.267 Chain E: A.8, T.9 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Q.267 Hydrogen bonds: A:K.42, A:S.97, A:S.172 pi-Stacking: A:H.45 LRL.3: 14 residues within 4Å: Chain C: K.42, H.45, T.88, M.92, F.96, S.97, I.112, N.169, G.170, S.171, S.172, Y.266, Q.267 Chain F: G.8 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:Q.267 Hydrogen bonds: C:K.42, C:S.97, C:S.172 pi-Stacking: C:H.45

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain B: E.425, D.499 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.425 MG.4: 3 residues within 4Å: Chain D: E.425, D.499 Chain F: G.12 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.425

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bakker, A.T. et al., Discovery of isoquinoline sulfonamides as allosteric gyrase inhibitors with activity against fluoroquinolone-resistant bacteria. Nat.Chem. (2024)

Release Date

2024-06-19

Peptides

DNA gyrase subunit A: AC
DNA gyrase subunit B: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

DNA gyrase subunit A

DNA gyrase subunit B