SMTL ID : 8qso.1

Crystal structure of human Mcl-1 in complex with compound 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 13 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, E.112, E.154, P.155, Y.156, F.157, W.231, W.341 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.63, A:Y.156 Water bridges: A:D.66, A:R.67

1 x WXW: (13S,16R,19S)-16-benzyl-43-ethoxy-N-methyl-7,11,14,17-tetraoxo-13-phenyl-5-oxa-2,8,12,15,18-pentaaza-1(1,4),4(1,2)-dibenzena-9(1,4)-cyclohexanacycloicosaphane-19-carboxamide(Non-covalent)

WXW.2: 15 residues within 4Å: Chain A: V.413, V.417, H.421, A.424, F.425, M.447, V.450, N.457, G.459, R.460, T.463, L.464, F.467, F.515, F.516 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.413, A:V.417, A:F.425, A:V.450, A:R.460, A:F.467, A:F.515, A:F.515, A:F.516 Hydrogen bonds: A:N.457, A:R.460, A:R.460, A:T.463, A:T.463

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hekking, K.F.W. et al., Development of Potent Mcl-1 Inhibitors: Structural Investigations on Macrocycles Originating from a DNA-Encoded Chemical Library Screen. J.Med.Chem. (2024)

Release Date

2024-02-14

Peptides

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1

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