SMTL ID : 8qsv.1

Crystal structure of SPOUT1/CENP-32 bound to SAM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

homo-dimer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 18 residues within 4Å: Chain A: T.220, S.221, E.222, R.223, F.242, G.243, G.244, L.245, Q.246, G.247, L.248, V.271, N.272, T.273, Q.277, I.282, T.284, A.287 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.220, A:G.243, A:G.244, A:L.245, A:L.248, A:N.272, A:T.273, A:C.274 Water bridges: A:N.272 Salt bridges: A:R.223 SAM.2: 18 residues within 4Å: Chain B: T.220, S.221, E.222, R.223, F.242, G.243, G.244, L.245, Q.246, G.247, L.248, V.271, N.272, T.273, Q.277, I.282, T.284, A.287 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:T.220, B:T.220, B:E.222, B:G.243, B:G.244, B:L.245, B:L.248, B:N.272, B:T.273, B:C.274 Water bridges: B:N.272 Salt bridges: B:R.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dharmadhikari, A.V. et al., RNA methyltransferase SPOUT1/CENP-32 links mitotic spindle organization with the neurodevelopmental disorder SpADMiSS. Nat Commun (2025)

Release Date

2024-10-23

Peptides

Putative methyltransferase C9orf114: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative methyltransferase C9orf114

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