SMTL ID : 8qu3.1

NF-YB/C Heterodimer in Complex with a 13-mer NF-YA-derived Peptide Stabilized with C8-Hydrocarbon Linker

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 4 residues within 4Å: Chain A: X.1, L.4, I.7 Chain C: D.88 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.88

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain C: K.25, K.35, M.36, I.37 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.25, C:I.37 Water bridges: C:I.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Durukan, C. et al., Binding dynamics of a stapled peptide targeting the transcription factor NF-Y. Chembiochem (2024)

Release Date

2024-03-20

Peptides

Nuclear transcription factor Y subunit alpha: A
Nuclear transcription factor Y subunit beta: B
Nuclear transcription factor Y subunit gamma: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Nuclear transcription factor Y subunit alpha

Nuclear transcription factor Y subunit beta

Nuclear transcription factor Y subunit gamma

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