SMTL ID : 8qu4.1

NF-YB/C Heterodimer in Complex with a 13-mer NF-YA-derived Peptide Stabilized with C8-Hydrocarbon Linker in an alternative binding pose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain C: F.84, D.85, Q.86 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.85, C:Q.86

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 3 residues within 4Å: Chain A: L.4, I.7 Chain C: D.88 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Durukan, C. et al., Binding Dynamics of a Stapled Peptide Targeting the Transcription Factor NF-Y. Chembiochem (2024)

Release Date

2024-03-20

Peptides

Nuclear transcription factor Y subunit alpha: A
Nuclear transcription factor Y subunit beta: B
Nuclear transcription factor Y subunit gamma: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Nuclear transcription factor Y subunit alpha

Nuclear transcription factor Y subunit beta

Nuclear transcription factor Y subunit gamma

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