SMTL ID : 8que.1

Structure of the Bacteriophage PhiKZ non-virion RNA Polymerase bound to DNA and RNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x A- G- A- C- A- G: RNA(Non-covalent)

A-G-A-C-A-G.1: 26 residues within 4Å: Chain A: R.398, N.399, P.400, D.437, D.439, G.440, D.441 Chain B: T.36, Q.40, K.386, K.394, E.576, K.577 Chain D: R.468, A.474, H.475, K.502, N.503 Chain F: A.32, C.33, T.34, G.35, T.36, C.37, T.38, A.39 Protein-ligand interaction information (PLIP) not available

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.78, C.80, C.93, C.96 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.78, A:C.80, A:C.93, A:C.96 ZN.3: 5 residues within 4Å: Chain C: C.288, R.336, C.341, C.350, C.353 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.288, C:C.341, C:C.350, C:C.353

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Martin Garrido, N. et al., Structure of the Bacteriophage PhiKZ Non-virion RNA Polymerase Transcribing from its Promoter p119L. J.Mol.Biol. (2024)

Release Date

2024-07-31

Peptides

PHIKZ055: A
DNA-directed RNA polymerase: B
PHIKZ074: C
PHIKZ123: D
PHIKZ068: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
E

G
B

PHIKZ055

DNA-directed RNA polymerase

PHIKZ074

PHIKZ123

PHIKZ068

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