SMTL ID : 8qwl.1

Structure of p53 cancer mutant Y163C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:H.86, A:C.145, A:C.149

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: F.20, L.21, S.23, C.31, T.32, Y.33, L.40, P.49 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.21, A:Y.33, A:P.49 Water bridges: A:S.23, A:Y.33 EDO.3: 3 residues within 4Å: Chain A: V.4, P.5, S.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.6 Water bridges: A:V.4 EDO.5: 2 residues within 4Å: Chain A: R.17, W.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.17, A:R.17

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.4: 3 residues within 4Å: Chain A: S.148, R.155, R.180 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.148, A:S.148 Water bridges: A:R.155, A:R.180, A:R.180 Salt bridges: A:R.155, A:R.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balourdas, D.I. et al., Structural basis of p53 inactivation by cavity-creating cancer mutations and its implications for the development of mutant p53 reactivators. Cell Death Dis (2024)

Release Date

2024-06-19

Peptides

Cellular tumor antigen p53: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cellular tumor antigen p53